I've been to some of these, but not all! Mostly science related or containing good selections of historical things as well. (Also aquariums!)
1. American Museum of Natural History
2. Science Museum
3. Museo Civico di Storia Naturale
4. Australian Museum
5. Metropolitan Museum of Art
6. Museum of Science and Industry
7. The Children's Museum of Indianapolis
8. Deutsches Museum
9. Harvard Museum of Natural History
10. Mütter Museum
11. Natural History Museum
12. Museum of Science
13. California Academy of Sciences
14. Osaka Aquarium Kaiyukan
15. New England Aquarium
16. Monterey Bay Aquarium
17. National Museum of Natural History
18. National Air and Space Museum
19. Steven F Udvar-Hazy Center
20. Pima Air & Space Museum
21. The Field Museum
22. Shedd Aquarium
23. Museum of Jurassic Technology
24. Denver Museum of Nature and Science
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